PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04967g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 218aa    MW: 24986.8 Da    PI: 6.3687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04967g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.7e-05731131355
                               HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               R+++ + ++ L++l+P+ +   +  K +   i+ + +++Ik L+
  Niben101Scf04967g00009.1  73 RRKMAEMYSLLQSLVPTlS---NVHKETRENIVAESTDHIKRLE 113
                               89***************44...9999***************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.80460112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-770138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-771121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.448153218IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MWKEMMKEET EEEEIERLFM GVMEGYKDAC IPPLTDFSTT NEMVSLNYGN RQRKEGPILE  60
NESINIQKGR EGRRKMAEMY SLLQSLVPTL SNVHKETREN IVAESTDHIK RLEQEIARLE  120
NLKKSFLVDK PTLSQCRNRF SSVSVTVSKG LAIFGIQFQL SQGVMTNIFC VLDKHHAEVL  180
AANISVSDHR IATLTITVMI RNNKSDIVEN IQRELLLV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803955.11e-125PREDICTED: uncharacterized protein LOC104249264
RefseqXP_009630063.11e-125PREDICTED: uncharacterized protein LOC104120081
RefseqXP_016496901.11e-125PREDICTED: uncharacterized protein LOC107815786
TrEMBLK4AWY32e-88K4AWY3_SOLLC; Uncharacterized protein
STRINGSolyc01g067340.1.16e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132481415